RegulonDB RegulonDB 11.1: Operon Form
   

yefM-yoeB operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: yefM-yoeB
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: yefM-yoeB
Gene(s): yoeB, yefM   Genome Browser M3D Gene expression COLOMBOS
Evidence: [COMP-AINF] Inferred computationally without human oversight
Promoter
Name: yefMp
+1: 2089733
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 20
Sequence: ccttgatctacaaactaattaataaatagttaattaacgctcatcattgtacaatgaactGtacaaaagaggagattgaca
                                  -35                  -10  +1                   
Evidence: [COMP-AINF]
[COMP-HINF]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
[RS-EPT-CBR]
Reference(s): [1] Huerta AM., et al., 2003
[2] Kedzierska B., et al., 2007
[3] Salgado H, et al., 2012
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal YefM repressor yefMp 2089725 2089739 2.5 cattgtacaaTGAACTGTACAAAAGaggagattga nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] C [2], [4]
proximal YefM repressor yefMp 2089737 2089751 -10.5 attaacgctcATCATTGTACAATGAactgtacaaa nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] W [2]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal YefM-YoeB repressor yefMp 2089725 2089738 2.5 attgtacaatGAACTGTACAAAAGaggagattga nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] C [2], [4]
proximal YefM-YoeB repressor yefMp 2089737 2089750 -10.5 ttaacgctcaTCATTGTACAATGAactgtacaaa nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] C [2], [4]





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