Name: |
yojI |
Gene(s): |
yojI
Genome Browser
M3D Gene expression
COLOMBOS
|
Evidence: |
[ICWHO] Inferred computationally without human oversight |
Promoter |
|
Name: |
yojIp |
+1: |
2308641 |
Sigma Factor: |
Sigma70 Sigmulon |
Distance from start of the gene: |
26
|
Sequence: |
aaaaagaataaaaataagaattattattgctgtgcgcgcgaagatgtttaaactgcgggcTgtaattcattgtccgggttt -35 -10 +1
|
Note(s): |
We assigned a putative transcriptional start site to this promoter based on the observation that the majority of the promoters, whose transcriptional start sites were determined experimentally, present a distance of 6 nucleotides between the transcriptional start site and the -10 box Harley CB, Reynolds RP,1987. |
Evidence: |
[HIPP] [ICWHO] [IHBCE]
|
Reference(s): |
[1] Huerta AM., et al., 2003 [2] Socias SB., et al., 2009
|
Transcription factor |
Function |
Promoter |
Binding Sites |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
Lrp-L-leucine |
activator |
yojIp |
2309048
|
2309059
|
-412.5
|
catgccacagAGTTTTCATAATttatgtcaac
|
[GEA]
|
[2]
|
Lrp-L-leucine |
activator |
yojIp |
2308940
|
2308951
|
-304.5
|
actgtcgctgCATCAGGATAAAgacgaaccgg
|
[GEA]
|
[2]
|
Lrp-L-leucine |
activator |
yojIp |
2308876
|
2308887
|
-240.5
|
ggcttacccgCGATTTTTCAATttggcggcct
|
[GEA]
|
[2]
|
Lrp-L-leucine |
activator |
yojIp |
2308830
|
2308841
|
-194.5
|
cgctcaaacgTTTGTTGTTGGAacatggcgat
|
[GEA]
|
[2]
|
Lrp-L-leucine |
activator |
yojIp |
2308690
|
2308701
|
-54.5
|
caggcaggtaAAAAAGAATAAAaataagaatt
|
[GEA]
|
[2]
|
Lrp-L-leucine |
activator |
yojIp |
2308679
|
2308690
|
-43.5
|
aaaagaataaAAATAAGAATTAttattgctgt
|
[GEA]
|
[2]
|