RegulonDB RegulonDB 10.9: Operon Form

yfaY operon and associated TUs in Escherichia coli K-12 genome

Name: yfaY
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit       
Name: yfaY
Gene(s): yfaY   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Name: yfaYp
+1: 2363655
Distance from start of the gene: 22
Sequence: ttctgtcgcgccattcagtttcttactacgccttatctccctttgcgttatagtgattcgAtaacaaaagcaggagataac
Evidence: [HTTIM]    
Reference(s): [1] Mendoza-Vargas A., et al., 2009

RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: reverse
Evidence: [ICA] Inferred by computational analysis
Reference(s): [2] Merino E, et al., 2005
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -16.2 2363692 2363736 acgccagtttCTGATCCCTTCCGGCGCGGCATTCTGTCGCGCCATTCAGTTTCTtactacgcct
  anti-terminator -12.3 2363718 2363762 ggctgacggcCCGTATGTTGGGGTTAACGCCAGTTTCTGATCCCTTCCGGCGCGgcattctgtc
  anti-anti-terminator -20.6 2363744 2363793 cgggtaaagaCGGTAACCGCGACAACGCCGTGGCTGACGGCCCGTATGTTGGGGTTAACgccagtttct
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"