RegulonDB RegulonDB 11.1: Operon Form
   

sodC operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: sodC
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: sodC
Gene(s): sodC   Genome Browser M3D Gene expression COLOMBOS
Evidence: [COMP-AINF] Inferred computationally without human oversight
[EXP-IDA-TRANSCRIPT-LEN-DETERMINATION] Length of transcript experimentally determined
Reference(s): [1] Imlay KR., et al., 1996
Promoter
Name: sodCp
+1: 1724679
Sigma Factor: Sigma38 Sigmulon
Distance from start of the gene: 24
Sequence: gtaagcacttttaggaatagccgccgttcaaaaatgtgtcactggtttacacttattcagGaatgcacaatgaacggaggt
                            -35                      -10    +1                   
Evidence: [COMP-AINF]
[COMP-HINF]
[EXP-IDA-HPT-TRANSCR-INIT-M-RACE-MAP]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
Reference(s): [2] Huerta AM., et al., 2003
[1] Imlay KR., et al., 1996
[3] Mendoza-Vargas A., et al., 2009


Evidence    

 [COMP-AINF] Inferred computationally without human oversight

 [COMP-HINF] Inferred by a human based on computational evidence

 [EXP-IDA-HPT-TRANSCR-INIT-M-RACE-MAP] High-throughput transcription initiation mapping

 [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] Transcription initiation mapping


Reference(s)    

 [1] Imlay KR., Imlay JA., 1996, Cloning and analysis of sodC, encoding the copper-zinc superoxide dismutase of Escherichia coli., J Bacteriol 178(9):2564-71

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [3] Mendoza-Vargas A., Olvera L., Olvera M., Grande R., Vega-Alvarado L., Taboada B., Jimenez-Jacinto V., Salgado H., Juarez K., Contreras-Moreira B., Huerta AM., Collado-Vides J., Morett E., 2009, Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coli., PLoS One 4(10):e7526

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