RegulonDB RegulonDB 11.1: Operon Form

ydhR operon and associated TUs in Escherichia coli K-12 genome

Name: ydhR
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit       
Name: ydhR
Gene(s): ydhR   Genome Browser M3D Gene expression COLOMBOS
Note(s): A potential RNA G-quadruplex structure, formed by guanine-rich sequences located in the coding sequence region of the gene, was identified for ydhR. This structure could regulate the expression of the gene, as observed for hemL gene expression Shao X, Zhang W, Umar MI, Wong HY, Seng Z, Xie Y, Zhang Y, Yang L, Kwok CK, Deng X,2020.
Evidence: [COMP-AINF] Inferred computationally without human oversight

RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: forward
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -17.2 1746562 1746601 atggtgggggTCGGTGGTTCGAGTCCACTCGGACGCACCAGATTTTCTTaatctggtct
  anti-terminator -16.6 1746532 1746579 tagctcagttGGTTAGAGCACCACCTTGACATGGTGGGGGTCGGTGGTTCGAGTCCActcggacgca
  anti-anti-terminator -6.0 1746520 1746556 atcctgcgtcCGTAGCTCAGTTGGTTAGAGCACCACCTTGACATGGtgggggtcgg
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"