RegulonDB RegulonDB 10.8: Operon Form

msrB operon and associated TUs in Escherichia coli K-12 genome

Name: msrB
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit       
Name: msrB
Gene(s): msrB   Genome Browser M3D Gene expression COLOMBOS
Evidence: [IC] Inferred by curator
Name: msrBp6
+1: 1862464
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 35
Sequence: agatcaagtttaggacaaaattttgccagttggtgttaatgttttgttagaatcagtcacGtaatgtgagcacgattaaag
                       -35                      -10         +1                   
Note(s): Huerta et al. identified a prediction of a possible transcription start site, located at bp -37 in relation to the start of the msrB gene Huerta AM,2003 Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 4.96. P-value: 1.033e-5
Evidence: [CV(RS-EPT-CBR/TA)]
Reference(s): [1] Bos J., et al., 2013
[2] Huerta AM., et al., 2003
[3] Salgado H, et al., 2012

Transcription unit       
Gene(s): msrB   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight

Regulation by sRNA    
  Small RNA name (Regulator) Regulation type Mechanism Function Binding Sites Evidence Reference
LeftPos RightPos Sequence (RNA-strand)
  ryhB antisense post-transcriptional regulation repressor       [IMP] [4]
Notes: "The provided sequence is that of the RNA strand,i.e. 'U's are showed instead the 'T'"