RegulonDB RegulonDB 11.1: Operon Form

yeaE operon and associated TUs in Escherichia coli K-12 genome

Name: yeaE
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: yeaE
Gene(s): yeaE   Genome Browser M3D Gene expression COLOMBOS
Evidence: [COMP-AINF] Inferred computationally without human oversight
Name: yeaEp
+1: 1865724
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 88
Sequence: cgatggtggataaatcctggactggcctgatttctaccgggatcacctacaaattctgatAatgcatctttccagggcatt
                                    -35                  -10+1                   
Evidence: [COMP-AINF]
Reference(s): [1] Huerta AM., et al., 2003
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal NsrR repressor yeaEp 1865715 1865726 5.0 acaaattctgATAATGCATCTTtccagggcat nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] W [2]

RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: reverse
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -6.7 1865670 1865688 cataaaaacaGGGCGTCACGCCCTGTTTtgcattacgg
  anti-terminator -5.26 1865683 1865723 aattctgataATGCATCTTTCCAGGGCATTTTGTGCATAAAAACAGGGCGtcacgccctg
  anti-anti-terminator -3.4 1865704 1865724 aaattctgatAATGCATCTTTCCAGGGCATtttgtgcata
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"