Name: |
yeaR-yoaG |
Gene(s): |
yoaG, yeaR
Genome Browser
M3D Gene expression
COLOMBOS
|
Note(s): |
Derrick et al. (2009) proposed that under conditions where Fis levels are raised, Fis binds at the yeaR promoter and prevents nitrate-dependent induction by blocking NarL binding to its target Squire DJ,2009 NarL activates the yeaR promoter independently of FNR Lin HY,200719245365]|. Based on an EMSA experiment, it was shown that purified FNR has no specific DNA site for FNR on the yeaR promoter Squire DJ,2009 Based on experiments utilizing a mutant background, it was shown that NarP plays little or no role in the yeaR promoter region Squire DJ,2009
|
Evidence: |
[ICWHO] Inferred computationally without human oversight |
Promoter |
|
Name: |
yeaRp |
+1: |
1879994 |
Sigma Factor: |
Sigma70 Sigmulon |
Distance from start of the gene: |
46
|
Sequence: |
gctaaaaagtaaccaataaatggtatttaaaatgcaaattatcaggcgtaccctgaaacgGctggaataaaccgttttcag -35 -10 +1
|
Evidence: |
[ICWHO] [TIM]
|
Reference(s): |
[1] Huerta AM., et al., 2003 [2] Lin HY., et al., 2007
|
Type |
Transcription factor |
Function |
Promoter |
Binding Sites |
Growth Conditions |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
proximal |
Fis
|
repressor |
yeaRp |
1880018
|
1880032
|
-31.0
|
ccaataaatgGTATTTAAAATGCAAattatcaggc |
nd
|
[BPP]
|
[3]
|
proximal |
Fis
|
repressor |
yeaRp |
1880042
|
1880056
|
-55.0
|
cgctgatatgGTGCTAAAAAGTAACcaataaatgg |
nd
|
[BPP]
|
[3]
|
Type |
Transcription factor |
Function |
Promoter |
Binding Sites |
Growth Conditions |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
proximal |
NsrR
|
repressor |
yeaRp |
1880017
|
1880035
|
-32.0
|
taaccaataaATGGTATTTAAAATGCAAAttatcaggcg |
nd
|
[GEA], [AIBSCS]
|
[2]
|
Transcription factor |
Function |
Promoter |
Binding Sites |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
Fis |
repressor |
yeaRp |
1880042
|
1880056
|
-55.0
|
cgctgatatgGTGCTAAAAAGTAACcaataaatgg
|
nd
|
[3]
|
NarL-phosphorylated |
activator |
yeaRp |
1880039
|
1880045
|
-48.0
|
tgctaaaaagTAACCAAtaaatggtat
|
[GEA]
|
[2], [3]
|
NarP-phosphorylated |
activator |
yeaRp |
1880034
|
1880049
|
-48.0
|
atggtgctaaAAAGTAACCAATAAATggtatttaaa
|
[GEA]
|
[2]
|
NarL-phosphorylated |
activator |
yeaRp |
1880030
|
1880036
|
-39.0
|
gtaaccaataAATGGTAtttaaaatgc
|
[GEA]
|
[2], [3]
|
NarP-phosphorylated |
activator |
yeaRp |
1880025
|
1880040
|
-39.0
|
aaaagtaaccAATAAATGGTATTTAAaatgcaaatt
|
[GEA]
|
[2]
|
NsrR |
repressor |
yeaRp |
1880017
|
1880035
|
-32.0
|
taaccaataaATGGTATTTAAAATGCAAAttatcaggcg
|
[GEA]
|
[2]
|
Fis |
repressor |
yeaRp |
1880018
|
1880032
|
-31.0
|
ccaataaatgGTATTTAAAATGCAAattatcaggc
|
nd
|
[3]
|