![]() ![]() ![]() ![]() |
Name: | yeaR-yoaG | ||||||||||
Gene(s): | yoaG, yeaR Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Note(s): | Derrick et al. (2009) proposed that under conditions where Fis levels are raised, Fis binds at the yeaR promoter and prevents nitrate-dependent induction by blocking NarL binding to its target Squire DJ,2009 NarL activates the yeaR promoter independently of FNR Lin HY,200719245365]|. Based on an EMSA experiment, it was shown that purified FNR has no specific DNA site for FNR on the yeaR promoter Squire DJ,2009 Based on experiments utilizing a mutant background, it was shown that NarP plays little or no role in the yeaR promoter region Squire DJ,2009 |
||||||||||
Evidence: | [COMP-AINF] Inferred computationally without human oversight | ||||||||||
Promoter | |||||||||||
Name: | yeaRp | ||||||||||
+1: | 1879994 | ||||||||||
Sigma Factor: | Sigma70 Sigmulon | ||||||||||
Distance from start of the gene: | 46 | ||||||||||
Sequence: |
gctaaaaagtaaccaataaatggtatttaaaatgcaaattatcaggcgtaccctgaaacgGctggaataaaccgttttcag -35 -10 +1 |
||||||||||
Evidence: |
[COMP-AINF] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] |
||||||||||
Reference(s): |
[1] Huerta AM., et al., 2003 [2] Lin HY., et al., 2007 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | Fis | repressor | yeaRp | 1880018 | 1880032 | -31.0 | ccaataaatgGTATTTAAAATGCAAattatcaggc | nd | [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | nd | [3] |
proximal | Fis | repressor | yeaRp | 1880042 | 1880056 | -55.0 | cgctgatatgGTGCTAAAAAGTAACcaataaatgg | nd | [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | nd | [3] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | NarL-phosphorylated | activator | yeaRp | 1880030 | 1880036 | -39.0 | gtaaccaataAATGGTAtttaaaatgc | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [2], [3] |
proximal | NarL-phosphorylated | activator | yeaRp | 1880039 | 1880045 | -48.0 | tgctaaaaagTAACCAAtaaatggtat | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [2], [3] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | NarP-phosphorylated | activator | yeaRp | 1880025 | 1880040 | -39.0 | aaaagtaaccAATAAATGGTATTTAAaatgcaaatt | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] | W | [2] |
proximal | NarP-phosphorylated | activator | yeaRp | 1880034 | 1880049 | -48.0 | atggtgctaaAAAGTAACCAATAAATggtatttaaa | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] | W | [2] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | NsrR | repressor | yeaRp | 1880017 | 1880035 | -32.0 | taaccaataaATGGTATTTAAAATGCAAAttatcaggcg | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] | W | [2] |
Reference(s) |
![]() |
---|---|