RegulonDB RegulonDB 10.8: Operon Form
   

yobF-cspC operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: yobF-cspC
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: yobF-cspC
Gene(s): cspC, yobF   Genome Browser M3D Gene expression COLOMBOS
Note(s): The mRNA that contains the cspC gene has been observed mainly in the poles of the cell 31540875.
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: yobFp2
+1: 1907617
Distance from start of the gene: 26
Sequence:
Note(s): This promoter appears to have more transcriptional sites at positions 1907615/6/7/8, as determined by high-throughput screening of maps of promoters Lacoux C,2020.
Evidence: [CV(RS-EPT-CBR/TA)]
[CV(TA/TIM)]
[HTIM]
[RS-EPT-CBR]
[TIM]
Reference(s): [1] Hemm MR., et al., 2010
[2] Mendoza-Vargas A., et al., 2009
[3] Salgado H, et al., 2012


Transcription unit          
Name: yobF-cspC
Gene(s): cspC, yobF   Genome Browser M3D Gene expression COLOMBOS
Note(s): The mRNA that contains the cspC gene has been observed mainly in the poles of the cell 31540875.
Promoter
Name: yobFp1
+1: 1907793
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 202
Sequence: atgtaataacttctcccactggcctggaacaactgaacttattgaactatgttagaaaatAcgccagtttaagtatctgcc
                        -35                     -10         +1                   
Evidence: [TIM]
Reference(s): [1] Hemm MR., et al., 2010
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote BtsR-Phosphorylated repressor yobFp1 1907926 1907937 -138.0 gggtaattaaTAGCCGTTAACTgactgtttta nd , [CV(CHIP-SV/GEA/GS)], [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/GS)], [CV(GEA/ROMA)], [GEA], [GS] [4]
remote BtsR-Phosphorylated repressor yobFp1 1907962 1907973 -174.0 aaatttacaaTCCCTTTGGGGAttgacttctc nd , [CV(CHIP-SV/GEA/GS)], [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/GS)], [CV(GEA/ROMA)], [GEA], [GS] [4]
remote BtsR-Phosphorylated repressor yobFp1 1907995 1908006 -207.0 tttttttgctCATTCATCAATTtttcttattt nd , [CV(CHIP-SV/GEA/GS)], [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/GS)], [CV(GEA/ROMA)], [GEA], [GS] [4]


Regulation by sRNA    
  Small RNA name (Regulator) Regulation type Mechanism Function Binding Sites Evidence Reference
LeftPos RightPos Sequence (RNA-strand)
  oxyS antisense post-transcriptional regulation repressor      
Notes: "The provided sequence is that of the RNA strand,i.e. 'U's are showed instead the 'T'"





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