RegulonDB RegulonDB 11.0: Operon Form

yebG operon and associated TUs in Escherichia coli K-12 genome

Name: yebG
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: yebG
Gene(s): yebG   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Name: yebGp
+1: 1930765
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 18
Sequence: gtctttattgctgatgttgatttctcaaccgaaaagaaatatactgtataaaatcacagtTattatgagaggctgcaaatg
                      -35                      -10          +1                   
Note(s): We assigned a putative transcriptional start site to this promoter based on the observation that the majority of the promoters, whose transcriptional start sites were determined experimentally, present a distance of 6 nucleotides between the transcriptional start site and the -10 box Harley CB, Reynolds RP,1987.
Evidence: [HIPP]
Reference(s): [1] Huerta AM., et al., 2003
[2] Lomba MR., et al., 1997
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal LexA repressor yebGp 1930765 1930784 -9.5 aaaagaaataTACTGTATAAAATCACAGTTattatgagag nd [GEA], [AIBSCS], [APIORCISFBSCS], [IHBCE] [2]

RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: reverse
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -11.7 1930817 1930857 tgattaattcCGCGCGCAGTATAAACGAAAACGTTTGCGTGTGTCTTTATtgctgatgtt
  anti-anti-terminator -10.2 1930894 1930922 ataacatcacGCGAGTTGCTGCCGGACGCAGCGCAGTGcctaataacg
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"