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Name: | shiA | |||||||
Gene(s): | shiA Genome Browser M3D Gene expression COLOMBOS | |||||||
Evidence: | [COMP-AINF] Inferred computationally without human oversight | |||||||
Promoter | ||||||||
Name: | shiAp | |||||||
+1: | 2053566 | |||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||
Distance from start of the gene: | 77 | |||||||
Sequence: |
ttgccgctaatcagccataaaatcatttgcagatgcgctctgtcgaggtagtctcataagGttcgtttatagatcgacggc -35 -10 +1 |
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Evidence: |
[COMP-HINF] [EXP-IDA-HPT-TRANSCR-INIT-M-RACE-MAP] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] [RS-EPT-CBR] |
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Reference(s): |
[1] Liu F., et al., 2018 [2] Prevost K., et al., 2007 [3] Salgado H, et al., 2012 |
sRNA | TU Regulated | Function | Binding Sites | Regulatory Mechanism | Evidence (Confirmed, Strong, Weak) | Reference(s) | ||
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PosLeft | PosRight | Target sequence (mRNA) | ||||||
small regulatory RNA RyhB | shiA | activator | 2053566 | 2053616 | GUUCGUUUAUAGAUCGACGGCAAUGUGAGUUACCUUUUCCAUACUAAUUAU | TRANSLATION-BLOCKING, MRNA-DEGRADATION | [EXP-IEP], [EXP-IMP-SITE-MUTATION] | [2] |
Reference(s) |
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