RegulonDB RegulonDB 11.1: Operon Form

uspE operon and associated TUs in Escherichia coli K-12 genome

Name: uspE
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: uspE
Gene(s): uspE   Genome Browser M3D Gene expression COLOMBOS
Note(s): uspE gene expression is induced under exposure to hydrogen peroxide Hodges AP,2010
Evidence: [COMP-AINF] Inferred computationally without human oversight
Name: uspEp
+1: 1398659
Distance from start of the gene: 37
Sequence: ttgatctggcagaaggttcatcactgtttcattcaccagatatgggttaatcttttaattAcaaactgcgttgacagttgt
Reference(s): [1] Mendoza-Vargas A., et al., 2009
[2] Salgado H, et al., 2012
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd GadX activator uspEp nd nd nd nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS] W [3]
Allosteric regulation of RNA-polymerase
  Regulator Function Promoter target of RNApol Growth Conditions Note Evidence Reference
  ppGpp activation uspEp nd   [EXP-IEP] [4]
Evidence: [EXP-IEP] Inferred from expression pattern
Reference(s): [4] Gustavsson N., et al., 2002