RegulonDB RegulonDB 10.8: Operon Form

ydfH operon and associated TUs in Escherichia coli K-12 genome

Name: ydfH
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: ydfH
Gene(s): ydfH   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Name: ydfHp
+1: 1628326
Distance from start of the gene: 26
Sequence: tttatacccggcgtaactgccgggttattgcttgtcacaaaaaagtggtagactcatgcaGttaactcactcacaagcaag
Evidence: [CV(RS-EPT-CBR/TA)]
Reference(s): [1] Mendoza-Vargas A., et al., 2009
[2] Salgado H, et al., 2012
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal PhoB-Phosphorylated activator ydfHp 1628297 1628315 -20.0 gggttattgcTTGTCACAAAAAAGTGGTAgactcatgca nd [APIORCISFBSCS], [BPP], [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/ROMA)], [GEA] [3]