RegulonDB RegulonDB 11.1: Operon Form

ynfB-speG operon and associated TUs in Escherichia coli K-12 genome

Name: ynfB-speG
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: ynfB-speG
Gene(s): ynfB, speG   Genome Browser M3D Gene expression COLOMBOS
Evidence: [COMP-AINF] Inferred computationally without human oversight
Name: ynfBp
+1: 1655709
Sigma Factor: Sigma38 Sigmulon
Distance from start of the gene: 99
Sequence: aaaatagtaacgttgttttaatcatctttgtctcttattgacatcatgtatagttataggGcgacataatatcatcaatat
Reference(s): [1] Mendoza-Vargas A., et al., 2009
[2] Seo SW., et al., 2015
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote GadX repressor ynfBp 1655605 1655624 -94.5 ttaaccacaaCCAGGGCAGAAAGCATCCAAtaatttcaca nd [EXP-IEP-RNA-SEQ], [COMP-HINF], [EXP-CHIP-EXO-MANUAL] S [2]