RegulonDB RegulonDB 11.1: Operon Form
   

hdhA operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: hdhA
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: hdhA
Gene(s): hdhA   Genome Browser M3D Gene expression COLOMBOS
Evidence: [COMP-AINF] Inferred computationally without human oversight
Promoter
Name: hdhAp
+1: 1698122
Distance from start of the gene: 82
Sequence: tattcccgcccggctcattgcagcgaaataatcctctctttatctgctatacctggtagtGtcctttcctcaaggttaatg
Evidence: [EXP-IDA-HPT-TRANSCR-INIT-M-RACE-MAP]
Reference(s): [1] Mendoza-Vargas A., et al., 2009


RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: reverse
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -6.5 1698063 1698090 taaaaaatgtGGCACACAGGCGGTGCCTTTTATTTTTactgaagttc
  anti-terminator -4.9 1698082 1698130 tctgctatacCTGGTAGTGTCCTTTCCTCAAGGTTAATGATAAAAAATGTGGCACACAggcggtgcct
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"


Evidence    

 [EXP-IDA-HPT-TRANSCR-INIT-M-RACE-MAP] High-throughput transcription initiation mapping


Reference(s)    

 [1] Mendoza-Vargas A., Olvera L., Olvera M., Grande R., Vega-Alvarado L., Taboada B., Jimenez-Jacinto V., Salgado H., Juarez K., Contreras-Moreira B., Huerta AM., Collado-Vides J., Morett E., 2009, Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coli., PLoS One 4(10):e7526

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