RegulonDB RegulonDB 10.10: Operon Form

ycbJ operon and associated TUs in Escherichia coli K-12 genome

Name: ycbJ
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit       
Name: ycbJ
Gene(s): ycbJ   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Name: ycbJp
+1: 971672
Distance from start of the gene: 80
Sequence: cacttcagccaattttgggaggagtgtcgtaccgttacgattttcctcaatttttcttttCaacaattgatctcattcagg
Evidence: [HTTIM]    
Reference(s): [1] Mendoza-Vargas A., et al., 2009

RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: forward
Evidence: [ICA] Inferred by computational analysis
Reference(s): [2] Merino E, et al., 2005
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -13.4 971630 971671 caattttgggAGGAGTGTCGTACCGTTACGATTTTCCTCAATTTTTCTTTTcaacaattga
  anti-terminator -17.0 971608 971641 tttcacttcaCGACACTTCAGCCAATTTTGGGAGGAGTGTCGTaccgttacga
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"