RegulonDB RegulonDB 10.9: Operon Form
   

yceJI operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: yceJI
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: yceJI
Gene(s): yceI, yceJ   Genome Browser M3D Gene expression COLOMBOS
Note(s): Analysis of gene expression has proved that under NlpE lipoprotein overexpression, the presence of the protein CpxR causes increased transcription of the yceJ gene; however, no DNA sequence related to the consensus DNA-binding site of CpxR has been identified in the regulatory region of the gene. Therefore, the effect of CpxR on yceJ is probably indirect Raivio TL,2013
Evidence: [ICWHO] Inferred computationally without human oversight
[ITCR] Inferred through co-regulation
Reference(s): [1] Nonaka G., et al., 2006
Promoter
Name: yceJp
+1: 1119071
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 25
Sequence: atcattcaatttgttatttttgtgttgcaattcattctccgacacgccattttctttctcTcgcaaattcgttttggatgc
                         -35                    -10         +1                   
Evidence: [AIPP]
[ICWHO]
[IDA]
Reference(s): [2] Huerta AM., et al., 2003
[1] Nonaka G., et al., 2006


Transcription unit       
Name: yceJI
Gene(s): yceI, yceJ   Genome Browser M3D Gene expression COLOMBOS
Note(s): Analysis of gene expression has proved that under NlpE lipoprotein overexpression, the presence of the protein CpxR causes increased transcription of the yceJ gene; however, no DNA sequence related to the consensus DNA-binding site of CpxR has been identified in the regulatory region of the gene. Therefore, the effect of CpxR on yceJ is probably indirect Raivio TL,2013
Evidence: [ICWHO] Inferred computationally without human oversight
[ITCR] Inferred through co-regulation
Reference(s): [1] Nonaka G., et al., 2006
Promoter
Name: yceJp2
+1: 1119071
Sigma Factor: Sigma32 Sigmulon
Distance from start of the gene: 25
Sequence: atcattcaatttgttatttttgtgttgcaattcattctccgacacgccattttctttctcTcgcaaattcgttttggatgc
                         -35                 -10            +1                   
Evidence: [AIPP]
[ICWHO]
[IDA]
Reference(s): [2] Huerta AM., et al., 2003
[1] Nonaka G., et al., 2006


Transcription unit       
Name: yceI
Gene(s): yceI   Genome Browser M3D Gene expression COLOMBOS
Note(s): Analysis of gene expression has proved that under NlpE lipoprotein overexpression, the presence of the protein CpxR causes increased transcription of the yceI gene; however, no DNA sequence related to the consensus DNA-binding site of CpxR has been identified in the regulatory region of the gene. Therefore, the effect of CpxR on yceI is probably indirect Raivio TL,2013
Evidence: [IC] Inferred by curator


Evidence    

 [AIPP] Automated inference of promoter position

 [ICWHO] Inferred computationally without human oversight

 [IDA] Inferred from direct assay


Reference(s)    

 [1] Nonaka G., Blankschien M., Herman C., Gross CA., Rhodius VA., 2006, Regulon and promoter analysis of the E. coli heat-shock factor, sigma32, reveals a multifaceted cellular response to heat stress., Genes Dev 20(13):1776-89

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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