RegulonDB RegulonDB 10.9: Operon Form

ycfJ operon and associated TUs in Escherichia coli K-12 genome

Name: ycfJ
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit       
Name: ycfJ
Gene(s): ycfJ   Genome Browser M3D Gene expression COLOMBOS
Note(s): Based on the improved computational program DTI (Direct Information criterion), which is an extension of the concept of MI that allows investigators to measure the direction of information flow between two random variables, and DTInfer, a new R-package for the inference of gene regulatory networks from microarrays based on directed information, the ycfJ gene was identified as a new target of PdhR Kaleta C,2010
The expression of the gene ycfJ is increased when colicin (at 30 ng/ml) is added to the medium 23421615.
Evidence: [ICWHO] Inferred computationally without human oversight

RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Translational
Strand: forward
Evidence: [ICA] Inferred by computational analysis
Reference(s): [1] Merino E, et al., 2005
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -11.22 1167552 1167589 ctgcttttctCCTTCGCTTGCATGATTGGCATAACTGCAAAGAAGGAggtgttcccg
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"