RegulonDB RegulonDB 11.0: Operon Form

yciW operon and associated TUs in Escherichia coli K-12 genome

Name: yciW
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: yciW
Gene(s): yciW   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Name: yciWp
+1: 1350132
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 25
Sequence: ctgatatttgttatcgccgatccgtctttctccccttcccgccttgcgtcaggataacgaTttcctttacgaccaaggagc
                            -35                   -10       +1                   
Evidence: [AIPP]
Reference(s): [1] Kawano Y., et al., 2015
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal CysB activator yciWp 1350162 1350204 -50.5 ccgttatctcTGTTATACCTTTCTGATATTTGTTATCGCCGATCCGTCTTTCTccccttcccg nd [GEA], [AIBSCS] [1], [2]

RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Translational
Strand: reverse
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -11.7 1350115 1350151 ccccttcccgCCTTGCGTCAGGATAACGATTTCCTTTACGACCAAGgagcgcccat
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"