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Name: | ybdN | ||||||||||
Gene(s): | ybdN Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Evidence: | [COMP-AINF] Inferred computationally without human oversight | ||||||||||
Promoter | |||||||||||
Name: | ybdNp | ||||||||||
+1: | 636686 | ||||||||||
Sigma Factor: | Sigma70 Sigmulon | ||||||||||
Distance from start of the gene: | 117 | ||||||||||
Sequence: |
atttattgaccgtctaaatgagagtttttgatatataactacagacagctactataacttTcatctatttattcacagcgc -35 -10 +1 |
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Evidence: |
[COMP-AINF] [COMP-AINF-POSITIONAL-IDENTIFICATION] |
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Reference(s): | [1] Huerta AM., et al., 2003 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
remote | ArcA-phosphorylated | activator | ybdNp | 636615 | 636629 | 64.5 | acagtgtttaCTTTATAATTAACAGacttatctca | nd | [COMP-AINF-SIMILAR-TO-CONSENSUS] | nd | [2] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
remote | CysB-O-acetyl-L-serine | activator | ybdNp | 636843 | 636885 | -177.5 | gatttactggGAATAGTCCCCTATGAACTTTATAATTCCTACCGTGACTTTCTtaacttaaaa | nd | [COMP-AINF-SIMILAR-TO-CONSENSUS] | nd | [3] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | FNR | activator | ybdNp | 636706 | 636719 | -26.5 | atgagagtttTTGATATATAACTAcagacagcta | nd | [COMP-AINF-SIMILAR-TO-CONSENSUS] | nd | [2] |
remote | FNR | activator | ybdNp | 636983 | 636996 | -303.5 | tcagcaggggTTGATGATATTCAAatggaaatag | nd | [COMP-AINF-SIMILAR-TO-CONSENSUS] | nd | [2] |
Reference(s) |
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