RegulonDB RegulonDB 10.10: Operon Form
   

yafDE operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: yafDE
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: yafDE
Gene(s): yafD, yafE   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
[ITCR] Inferred through co-regulation
Reference(s): [1] Nonaka G., et al., 2006
Promoter
Name: yafDp
+1: 231064
Sigma Factor: Sigma32 Sigmulon
Distance from start of the gene: 58
Sequence: gcacttgcttacataacaatatacaattgctcgttgaaagagtgagctaaaatccctataAcagtagaaccctcccgagtg
                                  -35                 -10   +1                   
Evidence: [AIBSCS]
[AIPP]
[ICWHO]
[IDA]
[IEP]
[TIM]
Reference(s): [2] Huerta AM., et al., 2003
[1] Nonaka G., et al., 2006
[3] Wade JT., et al., 2006


Evidence    

 [AIBSCS] Automated inference based on similarity to consensus sequences

 [AIPP] Automated inference of promoter position

 [ICWHO] Inferred computationally without human oversight

 [IDA] Inferred from direct assay

 [IEP] Inferred from expression pattern

 [TIM] Transcription initiation mapping


Reference(s)    

 [1] Nonaka G., Blankschien M., Herman C., Gross CA., Rhodius VA., 2006, Regulon and promoter analysis of the E. coli heat-shock factor, sigma32, reveals a multifaceted cellular response to heat stress., Genes Dev 20(13):1776-89

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [3] Wade JT., Roa DC., Grainger DC., Hurd D., Busby SJ., Struhl K., Nudler E., 2006, Extensive functional overlap between sigma factors in Escherichia coli., Nat Struct Mol Biol 13(9):806-14

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