RegulonDB RegulonDB 10.8: Operon Form
   

yafDE operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: yafDE
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: yafDE
Gene(s): yafD, yafE   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
[ITC] Inferred through co-regulation
Reference(s): [1] Nonaka G., et al., 2006
Promoter
Name: yafDp
+1: 231064
Sigma Factor: Sigma32 Sigmulon
Distance from start of the gene: 58
Sequence: gcacttgcttacataacaatatacaattgctcgttgaaagagtgagctaaaatccctataAcagtagaaccctcccgagtg
                                  -35                 -10   +1                   
Evidence: [AIPP]
[CV(TA/TIM)]
[IDA]
[IEP]
[TIM]
Reference(s): [1] Nonaka G., et al., 2006
[2] Wade JT., et al., 2006


Evidence    

 [AIPP] Automated inference of promoter position

 [CV(TA/TIM)] cross validation(TA/TIM)

 [IDA] Inferred from direct assay

 [IEP] Inferred from expression pattern

 [TIM] Transcription initiation mapping


Reference(s)    

 [1] Nonaka G., Blankschien M., Herman C., Gross CA., Rhodius VA., 2006, Regulon and promoter analysis of the E. coli heat-shock factor, sigma32, reveals a multifaceted cellular response to heat stress., Genes Dev 20(13):1776-89

 [2] Wade JT., Roa DC., Grainger DC., Hurd D., Busby SJ., Struhl K., Nudler E., 2006, Extensive functional overlap between sigma factors in Escherichia coli., Nat Struct Mol Biol 13(9):806-14

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