RegulonDB RegulonDB 10.8: Operon Form
   

dinJ-yafQ operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: dinJ-yafQ
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: dinJ-yafQ
Gene(s): yafQ, dinJ   Genome Browser M3D Gene expression COLOMBOS
Note(s): The dinJ gene is repressed by both DnaA and LexA in an independent manner, but the actions of these two proteins are additive during the SOS response Wurihan,2018 The sites position for both regulators were not shown Wurihan,2018
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: dinJp
+1: 246615
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 113
Sequence: gtatcccggatcgtttctgaacaaacttaataaaccattattataaaattaacatatataTttcagttaattatgtaaaaa
                 -35                        -10             +1                   
Evidence: [AIPP]
Reference(s): [1] Huerta AM., et al., 2003
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote DinJ-YafQ repressor dinJp 246519 246535 89.5 tacaattcaaGCTGAATAAATATACAGcacaggagat nd [APIORCISFBSCS], [BPP], [CV(CHIP-SV/SM)], [SM] [3], [4]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote LexA repressor dinJp 246517 246536 89.5 ctacaattcaAGCTGAATAAATATACAGCAcaggagatac nd [AIBSCS], [CV(GEA/ROMA)], [GEA] [2], [3]





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