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Name: | dinJ-yafQ | ||||||||||
Gene(s): | yafQ, dinJ Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Note(s): | The dinJ gene is repressed by both DnaA and LexA in an independent manner, but the actions of these two proteins are additive during the SOS response Wurihan,2018 The sites position for both regulators were not shown Wurihan,2018 | ||||||||||
Evidence: | [COMP-AINF] Inferred computationally without human oversight | ||||||||||
Promoter | |||||||||||
Name: | dinJp | ||||||||||
+1: | 246615 | ||||||||||
Sigma Factor: | Sigma70 Sigmulon | ||||||||||
Distance from start of the gene: | 113 | ||||||||||
Sequence: |
gtatcccggatcgtttctgaacaaacttaataaaccattattataaaattaacatatataTttcagttaattatgtaaaaa -35 -10 +1 |
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Evidence: |
[COMP-AINF] [COMP-AINF-POSITIONAL-IDENTIFICATION] |
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Reference(s): | [1] Huerta AM., et al., 2003 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
remote | DinJ-YafQ | repressor | dinJp | 246519 | 246535 | 89.5 | tacaattcaaGCTGAATAAATATACAGcacaggagat | nd | [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION] | C | [4] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
remote | LexA | repressor | dinJp | 246517 | 246536 | 89.5 | ctacaattcaAGCTGAATAAATATACAGCAcaggagatac | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] | W | [2], [3] |
Reference(s) |
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