|
|
| Operon |  |
|---|---|
| Name: | ykfA-yafZ |
| This page displays every known transcription unit of this operon and their known regulation. | |
| Name: | yafZ |
| Gene(s): | yafZ Genome Browser M3D Gene expression COLOMBOS |
| Evidence: | [IC] Inferred by curator |
| Promoter | |
| Name: | yafZp |
| +1: | 268026 |
| Distance from start of the gene: | 21 |
| Sequence: |
catccctgttacttccctgcccctgtcgccgatgcgacggggatcccttttatttgttttCccgttatgaggagtctgctt |
| Evidence: | [EXP-IDA-HPT-TRANSCR-INIT-M-RACE-MAP] |
| Reference(s): | [1] Mendoza-Vargas A., et al., 2009 |
| Name: | ykfA-yafZ |
| Gene(s): | yafZ, ykfA Genome Browser M3D Gene expression COLOMBOS |
| Evidence: | [COMP-AINF] Inferred computationally without human oversight |
| RNA cis-regulatory element | |
|---|
| Regulation, transcriptional elongation | |
| Attenuator type: | Transcriptional |
| Strand: | reverse |
| Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
|---|---|---|---|---|---|
| terminator | -6.3 | 268104 | 268131 | acggtggtgtCAGTGGCCCGCGCCGTCTGGGATTTCTtcttctgagt | |
| terminator | -12.5 | 268980 | 269014 | atacgcaattAACGGCGGAATCTCACGATTCTACCGTTTTTTATtatttttcag | |
| anti-terminator | -24.6 | 268121 | 268169 | ccgccccggtGCGGGCCGTCATTCAGGCCGTGCGCACCACGGTGGTGTCAGTGGCCCGcgccgtctgg | |
| anti-terminator | -3.5 | 269000 | 269029 | atcatcactcTGAACATACGCAATTAACGGCGGAATCTCacgattctac | |
| anti-anti-terminator | -17.6 | 268147 | 268203 | gtactcgataGCATCAGTGCCTTTCCCCTGATACCCGCCCCGGTGCGGGCCGTCATTCAGGCCGTGcgcaccacgg | |
| anti-anti-terminator | -9.1 | 269019 | 269071 | gctgcctcaaGCGCAGAGGATTGAAAAAATCTTCAGATATATATCATCACTCTGAACATACGcaattaacgg |
| Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
[EXP-IDA-HPT-TRANSCR-INIT-M-RACE-MAP] High-throughput transcription initiation mapping