RegulonDB RegulonDB 11.1: Operon Form

ykgMO operon and associated TUs in Escherichia coli K-12 genome

Name: ykgMO
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: ykgMO
Gene(s): ykgO, ykgM   Genome Browser M3D Gene expression COLOMBOS
Evidence: [COMP-AINF] Inferred computationally without human oversight
[EXP-IDA-TRANSCRIPT-LEN-DETERMINATION] Length of transcript experimentally determined
Reference(s): [1] Hemm MR., et al., 2010
Name: ykgMp
+1: 312805
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 28
Sequence: ccacaaagagtcacagggattgagtgttgaaatgatccggatgagcatgtatctttatggTtatgttataacataacaggt
                                -35                    -10  +1                   
Evidence: [COMP-AINF]
Reference(s): [1] Hemm MR., et al., 2010
[2] Huerta AM., et al., 2003
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal Zur-Zn2+ repressor ykgMp 312784 312807 11.0 gtatctttatGGTTATGTTATAACATAACAGGTAaaaatgatga nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [COMP-HINF-SIMILAR-TO-CONSENSUS] W [1], [3], [4]