RegulonDB RegulonDB 10.8: Operon Form
   

mhpT operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: mhpT
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: mhpT
Gene(s): mhpT   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: mhpTp
+1: 375386
Sigma Factor: Sigma32 Sigmulon
Distance from start of the gene: 73
Sequence: acacgactgccggatgcgataaacgtcttgtccggcctacatttcgcccgtaggcagtcaTtaaatagttctgattacgcg
                            -35              -10            +1                   
Evidence: [AIPP]
Reference(s): [1] Gama-Castro S., et al., 2008
TF binding sites (TFBSs)
[NsrR,-] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote NsrR repressor mhpTp 374897 374908 -484.0 actgccgagaACGTGCATTTTGtatgcccatc nd [APIORCISFBSCS], [CV(GEA/ROMA)], [GEA] [2]


Evidence    

 [AIPP] Automated inference of promoter position

 [APIORCISFBSCS] A person inferred or reviewed a computer inference of sequence function based on similarity to a consensus sequence.

 [CV(GEA/ROMA)] cross validation(GEA/ROMA)

 [GEA] Gene expression analysis


Reference(s)    

 [1] Gama-Castro S., Jimenez-Jacinto V., Peralta-Gil M., Santos-Zavaleta A., Penaloza-Spinola MI., Contreras-Moreira B., Segura-Salazar J., Muniz-Rascado L., Martinez-Flores I., Salgado H., Bonavides-Martinez C., Abreu-Goodger C., Rodriguez-Penagos C., Miranda-Rios J., Morett E., Merino E., Huerta AM., Trevino-Quintanilla L., Collado-Vides J., 2008, RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation., Nucleic Acids Res 36(Database issue):D120-4

 [2] Partridge JD., Bodenmiller DM., Humphrys MS., Spiro S., 2009, NsrR targets in the Escherichia coli genome: new insights into DNA sequence requirements for binding and a role for NsrR in the regulation of motility., Mol Microbiol 73(4):680-94

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