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|
| Operon |  |
|---|---|
| Name: | brnQ-proY |
| This page displays every known transcription unit of this operon and their known regulation. | |
| Name: | brnQ-proY |
| Gene(s): | brnQ, proY Genome Browser M3D Gene expression COLOMBOS |
| Note(s): | A potential RNA G-quadruplex structure, formed by guanine-rich sequences located in the coding sequence region of the gene, was identified for brnQ . This structure could regulate the expression of the gene, as observed for hemL gene expression Shao X, Zhang W, Umar MI, Wong HY, Seng Z, Xie Y, Zhang Y, Yang L, Kwok CK, Deng X,2020. |
| Evidence: | [COMP-AINF] Inferred computationally without human oversight |
| Promoter | |
| Name: | brnQp |
| +1: | 419488 |
| Distance from start of the gene: | 103 |
| Sequence: |
gtcatactgactgcattaacgcggtaaatcgaaaaactattcttcgccgcgcctggttggGagtatttcccgctaaaattg |
| Evidence: | [EXP-IDA-HPT-TRANSCR-INIT-M-RACE-MAP] |
| Reference(s): | [1] Mendoza-Vargas A., et al., 2009 |
| RNA cis-regulatory element | |
|---|
| Regulation, transcriptional elongation | |
| Attenuator type: | Transcriptional |
| Strand: | forward |
| Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
|---|---|---|---|---|---|
| terminator | -22.5 | 420930 | 420964 | atttgttttaACCACGGGGCTGCGATGCCCCGTGGTTTTTTATTgtgttgatgg | |
| anti-terminator | -6.17 | 420898 | 420942 | ggtgacctccAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGcgatgccccg | |
| anti-anti-terminator | -17.1 | 420866 | 420909 | gccattatctGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAaatcactgaa |
| Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
[EXP-IDA-HPT-TRANSCR-INIT-M-RACE-MAP] High-throughput transcription initiation mapping