RegulonDB RegulonDB 10.10: Operon Form

yajR operon and associated TUs in Escherichia coli K-12 genome

Name: yajR
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit       
Name: yajR
Gene(s): yajR   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Name: yajRp
+1: 446687
Distance from start of the gene: 21
Sequence: aaatatttactaaaaaatccgcatgtttaccccattcgtttgccgctttacactagtcgcGaatttaaaacagaggtggta
Evidence: [HTTIM]    
Reference(s): [1] Mendoza-Vargas A., et al., 2009

RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: reverse
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -13.1 446772 446797 tctctattaaAAAGGTGCTACGGCACCTTTTTTCTtagcattaga
  anti-terminator -4.5 446786 446822 ctggctgctgTGTGGTAACAAAACCTCTCTATTAAAAAGGTGCTACggcacctttt
  anti-anti-terminator -11.0 446813 446855 gttgattttaTGGTACCGGACTCGCATACGCTGCTGGCTGCTGTGTGGTAACaaaacctctc
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"