RegulonDB RegulonDB 10.9: Operon Form

sokC operon and associated TUs in Escherichia coli K-12 genome

Name: sokC
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit       
Name: sokC
Gene(s): sokC   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
[LTED] Length of transcript experimentally determined
Reference(s): [1] Kawano M., et al., 2005
Name: sokCp
+1: 16952
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 0
Sequence: atgctgcttcattgctctcttctccttgaccttacggtcagtaagaggcactctacatgtGttcagcatataggaggcctc
                          -35                    -10        +1                   
Evidence: [HIPP]
Reference(s): [2] Poulsen LK., et al., 1991

RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Translational
Strand: forward
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -12.1 16905 16940 tgcttcattgCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCactctacatg
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"