RegulonDB RegulonDB 10.9: Operon Form
   

nadC operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: nadC
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: nadC
Gene(s): nadC   Genome Browser M3D Gene expression COLOMBOS
Note(s): A potential RNA G-quadruplex structure, formed by guanine-rich sequences located in the coding sequence region of the gene, was identified for nadC . This structure could regulate the expression of the gene, as observed for hemL gene expression 31964733.
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: nadCp
+1: 118663
Distance from start of the gene: 18
Sequence: ccttatatgtggtgctaatacccggttcagagtagcatgtttctaccttatgattcgttaGctatctggagttttaacatg
Evidence: [HTTIM]
Reference(s): [1] Raghavan R., et al., 2011
TF binding sites (TFBSs)
[CRP,+] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal CRP-cAMP activator nadCp 118698 118720 -45.5 aggatctcctTATATGTGGTGCTAATACCCGGTtcagagtagc nd [AIBSCS], [GEA] [1]


Evidence    

 [HTTIM] High-throughput transcription initiation mapping

 [AIBSCS] Automated inference based on similarity to consensus sequences

 [GEA] Gene expression analysis


Reference(s)    

 [1] Raghavan R., Sage A., Ochman H., 2011, Genome-wide identification of transcription start sites yields a novel thermosensing RNA and new cyclic AMP receptor protein-regulated genes in Escherichia coli., J Bacteriol 193(11):2871-4

RegulonDB