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Name: | kdpFABC | ||||||||||
Synonym(s): | OP00044, kdpABC | ||||||||||
Gene(s): | kdpC, kdpB, kdpA, kdpF Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Note(s): | The kdpABC operon should now be referred to as kdpFABC Gassel M,1999. The mRNA that contains the kdpB gene has been observed mainly in the cellular membrane Kannaiah S, Livny J, Amster-Choder O,2019. |
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Evidence: | [EXP-IEP-COREGULATION] Inferred through co-regulation [EXP-IMP-POLAR-MUTATION] Polar mutation [IC-ADJ-GENES-SAME-BIO-PROCESS] Products of adjacent genes in the same biological process |
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Reference(s): |
[1] Asha H., et al., 1993 [2] Gassel M., et al., 1999 [3] Hesse JE., et al., 1984 [4] Nakashima K., et al., 1993 [5] Rhoads DB., et al., 1978 |
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Promoter | |||||||||||
Name: | kdpFp | ||||||||||
+1: | 728849 | ||||||||||
Sigma Factor: | Sigma70 Sigmulon | ||||||||||
Distance from start of the gene: | 28 | ||||||||||
Sequence: |
tttacaccccgcccgcagatttttgcgaaatctttgcagccagaattctacccttccggtAtcacttttaggccactggag -35 -10 +1 |
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Evidence: |
[COMP-AINF] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] |
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Reference(s): |
[6] Huerta AM., et al., 2003 [7] Sugiura A., et al., 1992 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
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LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | KdpE-phosphorylated | activator | kdpFp | 728904 | 728921 | -63.0 | cttttgccatTTTTATACTTTTTTTACAccccgcccgc | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-GSELEX], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION] | C | [7], [8], [9] |
RNA cis-regulatory element | ![]() |
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Regulation, transcriptional elongation | |
Attenuator type: | Transcriptional |
Strand: | reverse |
Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
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terminator | -7.4 | 728778 | 728803 | aggcgtgataACCGGCGTATTGCTGGTGTTTTTATtactgggtta | |
terminator | -11.4 | 728821 | 728853 | tctacccttcCGGTATCACTTTTAGGCCACTGGAGGTGCACTgtgagtgcag | |
anti-terminator | -10.89 | 728795 | 728841 | gtatcactttTAGGCCACTGGAGGTGCACTGTGAGTGCAGGCGTGATAACCGGCGTattgctggtg | |
anti-anti-terminator | -14.4 | 728817 | 728857 | gaattctaccCTTCCGGTATCACTTTTAGGCCACTGGAGGTGCACTGTGAgtgcaggcgt |
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
Reference(s) |
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