RegulonDB RegulonDB 10.8: Operon Form
   

narQ operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: narQ
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: narQ
Gene(s): narQ   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: narQp
+1: 2585577
Distance from start of the gene: 154
Sequence: acgattcataacgaccttcttttttggttgtaaaaaccttattctttatatgagtgttgtTattacccgacttacagggga
Evidence: [HTIM]
Reference(s): [1] Raghavan R., et al., 2011
TF binding sites (TFBSs)
[CRP,-] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal CRP-cAMP repressor narQp 2585566 2585588 -0.5 tattctttatATGAGTGTTGTTATTACCCGACTtacaggggaa nd [APIORCISFBSCS], [CV(GEA/ROMA)], [GEA] [1]


Evidence    

 [HTIM] High-throughput transcription initiation mapping

 [APIORCISFBSCS] A person inferred or reviewed a computer inference of sequence function based on similarity to a consensus sequence.

 [CV(GEA/ROMA)] cross validation(GEA/ROMA)

 [GEA] Gene expression analysis


Reference(s)    

 [1] Raghavan R., Sage A., Ochman H., 2011, Genome-wide identification of transcription start sites yields a novel thermosensing RNA and new cyclic AMP receptor protein-regulated genes in Escherichia coli., J Bacteriol 193(11):2871-4

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