RegulonDB RegulonDB 11.1: Operon Form
   

rseP operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: rseP
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: rseP
Gene(s): rseP   Genome Browser M3D Gene expression COLOMBOS
Note(s): The expression of the rseP gene, encoding a protease, is affected by tetracycline antibiotic pressure. As tetracycline concentration increases, the gene expression also increases. The role of the induced protease could be degradation of porins to protect the cell against the antibiotic Viveiros M, Dupont M, Rodrigues L, Couto I, Davin-Regli A, Martins M, Pagès JM, Amaral L,2007
Promoter
Name: rsePp
+1: 196470
Sigma Factor: Sigma24 Sigmulon
Distance from start of the gene: 76
Sequence: caggaattaaggacagcggtcatttaattccaggacacggtggtattttagatcgtattgAtagcctgacggctgcggtac
                              -35                    -10    +1                   
Evidence: [COMP-AINF]
[COMP-HINF-POSITIONAL-IDENTIFICATION]
[COMP-HINF-SIMILAR-TO-CONSENSUS]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
Reference(s): [1] Dartigalongue C., et al., 2001
[2] Huerta AM., et al., 2003


Evidence    

 [COMP-AINF] Inferred computationally without human oversight

 [COMP-HINF-POSITIONAL-IDENTIFICATION] Human inference of promoter position

 [COMP-HINF-SIMILAR-TO-CONSENSUS] A person inferred or reviewed a computer inference of sequence function based on similarity to a consensus sequence.

 [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] Transcription initiation mapping


Reference(s)    

 [1] Dartigalongue C., Missiakas D., Raina S., 2001, Characterization of the Escherichia coli sigma E regulon., J Biol Chem 276(24):20866-75

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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