RegulonDB RegulonDB 10.9: Operon Form
   

wcaCDEF-gmd-fcl-gmm-wcaI-cpsBG-wcaJ-wzxC operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: wcaCDEF-gmd-fcl-gmm-wcaI-cpsBG-wcaJ-wzxC
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: wcaCDEF-gmd-fcl-gmm-wcaI-cpsBG-wcaJ-wzxC
Synonym(s): wcaCDEF-gmd-fcI-nudD-wcaI-cpsBG-wcaJ-wzxC
Gene(s): wzxC, wcaJ, cpsG, cpsB, wcaI, gmm, fcl, gmd, wcaF, wcaE, wcaD, wcaC   Genome Browser M3D Gene expression COLOMBOS
Note(s): The transcription of the genes cpsB and cpsG is enhanced in the absence of cardiolipin , an anionic phospholipid that appears to participate in signaling for biofilm formation Nepper JF,2019. The other genes of the operon were not included in the expression analysis when cardiolipin was not present.
Evidence: [ICWHO] Inferred computationally without human oversight
[PAGTSBP] Products of adjacent genes in the same biological process


RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Translational
Strand: reverse
Evidence: [ICA] Inferred by computational analysis
Reference(s): [1] Merino E, et al., 2005
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -16.2 2121573 2121598 tgtcggatctTCCCTTACCCCACTGCGGGTAAGGGgctaataaca
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"



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