RegulonDB RegulonDB 11.1: Operon Form
   

ymiA-yciX operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: ymiA-yciX
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: ymiA-yciX
Gene(s): ymiA, yciX   Genome Browser M3D Gene expression COLOMBOS
Evidence: [COMP-AINF] Inferred computationally without human oversight
[EXP-IEP-COREGULATION] Inferred through co-regulation
Reference(s): [1] Wiebe H., et al., 2015
Promoter
Name: ymiAp
+1: 1335090
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 58
Sequence: actggagacgattcgtaaattcgctggatttttgactaaagtttctttaggatttgtctcAtcgtatgattaattacacca
                         -35                    -10         +1                   
Evidence: [COMP-HINF]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
[IC]
Reference(s): [1] Wiebe H., et al., 2015
TF binding sites (TFBSs)
[YjjQ,-] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal YjjQ repressor ymiAp 1335077 1335091 -6.0 aaagtttcttTAGGATTTGTCTCATcgtatgatta nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [1]


Evidence    

 [COMP-HINF] Inferred by a human based on computational evidence

 [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] Transcription initiation mapping

 [IC] Inferred by curator

 [EXP-IEP-GENE-EXPRESSION-ANALYSIS] Gene expression analysis

 [COMP-AINF-SIMILAR-TO-CONSENSUS] Automated inference based on similarity to consensus sequences


Reference(s)    

 [1] Wiebe H., Gurlebeck D., Gross J., Dreck K., Pannen D., Ewers C., Wieler LH., Schnetz K., 2015, YjjQ Represses Transcription of flhDC and Additional Loci in Escherichia coli., J Bacteriol 197(16):2713-20

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