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| Operon |  |
|---|---|
| Name: | clpS |
| This page displays every known transcription unit of this operon and their known regulation. | |
| Name: | clpS | ||||||||||
| Gene(s): | clpS Genome Browser M3D Gene expression COLOMBOS | ||||||||||
| Evidence: | [COMP-HINF] Inferred by a human based on computational evidence | ||||||||||
| Promoter | |||||||||||
| Name: | clpSp | ||||||||||
| +1: | 922751 | ||||||||||
| Distance from start of the gene: | 162 | ||||||||||
| Sequence: |
gagaattagggcgagccgtcaagcatttgacaggggacaaggggcaggtatgaatcaaaaAtttgaagcagttaacgctat |
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| Note(s): | The transcription start site for clpSp was associated with a base pair on the TSS identified on Salmonella enterica serovar Typhimurium Colgan AM, Kröger C, Diard M, Hardt WD, Puente JL, Sivasankaran SK, Hokamp K, Hinton JC,2016. |
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| Evidence: | [IC] | ||||||||||
| Reference(s): | [1] Yeom J., et al., 2018 | ||||||||||
| Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
|---|---|---|---|---|---|---|---|---|---|---|---|
| LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
| proximal | PhoP-phosphorylated | repressor | clpSp | 922736 | 922752 | -7.0 | gacaaggggcAGGTATGAATCAAAAATttgaagcagt | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS] | S | [1] |
| RNA cis-regulatory element | |
|---|
| Regulation, transcriptional elongation | |
| Attenuator type: | Translational |
| Strand: | forward |
| Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
|---|---|---|---|---|---|
| terminator | -9.2 | 922866 | 922883 | tcttgtcagcGGCAGGGCGTTCTGCCGataaccgtaa |
| Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
[IC] Inferred by curator