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Name: | nhaAR |
Gene(s): | nhaA, nhaR Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [LTED] Length of transcript experimentally determined [PAGTSBP] Products of adjacent genes in the same biological process |
Reference(s): |
[1] Dover N., et al., 2001 [2] Pannuri A., et al., 2012 |
Promoter | |
Name: | nhaAp2 |
+1: | 17317 |
Sigma Factor: | Sigma38 Sigmulon |
Distance from start of the gene: | 172 |
Sequence: |
tacttttcctaattaatccctcaggaatcctcaccttaagctatgattatctaggcttagGgtcactcgtgagcgcttaca -35 -10 +1 |
Evidence: |
[ICWHO] [TIM] |
Reference(s): |
[1] Dover N., et al., 2001 [3] Huerta AM., et al., 2003 |
Name: | nhaAR | |||||||||
Synonym(s): | OP00281 | |||||||||
Gene(s): | nhaA, nhaR Genome Browser M3D Gene expression COLOMBOS | |||||||||
Note(s): | The nhaAR operon is induced by the presence of monovalent cations, high pH, low temperature, and stationary phase Padan E,1999. White-Ziegler CA, Um S, Pérez NM, Berns AL, Malhowski AJ, Young S,2008 | |||||||||
Evidence: | [LTED] Length of transcript experimentally determined [PAGTSBP] Products of adjacent genes in the same biological process |
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Reference(s): |
[1] Dover N., et al., 2001 [2] Pannuri A., et al., 2012 [4] Rahav-Manor O., et al., 1992 |
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Promoter | ||||||||||
Name: | nhaAp1 | |||||||||
+1: | 17458 | |||||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||||
Distance from start of the gene: | 31 | |||||||||
Sequence: |
aattattcctacactataatctgattttaacgatgattcgtgcggggtaaaatagtaaaaAcgatctattcacctgaaaga -35 -10 +1 |
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Evidence: |
[ICWHO] [TIM] |
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Reference(s): |
[1] Dover N., et al., 2001 [3] Huerta AM., et al., 2003 [5] Karpel R., et al., 1991 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
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LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | NhaR-Na+ | activator | nhaAp1 | 17384 | 17400 | -66.0 | ttcttcaataGCTCGTAAAAAACGAATtattcctaca | nd | [GEA], [BCE], [BPP] | [1], [4], [6], [7], [8] |
proximal | NhaR-Na+ | activator | nhaAp1 | 17406 | 17422 | -44.0 | cgaattattcCTACACTATAATCTGATtttaacgatg | nd | [GEA], [BCE], [BPP] | [1], [4], [6], [7], [8] |
proximal | NhaR-Na+ | activator | nhaAp1 | 17416 | 17432 | -34.0 | ctacactataATCTGATTTTAACGATGattcgtgcgg | nd | [GEA], [BCE], [BPP] | [1], [4], [6], [7] |
proximal | NhaR-Na+ | activator | nhaAp1 | 17447 | 17464 | -3.0 | gtgcggggtaAAATAGTAAAAACGATCTattcacctga | nd | [GEA], [BCE], [BPP] | [1], [4], [6], [7], [8] |
Name: | nhaR |
Gene(s): | nhaR Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [IHBCE] Inferred by a human based on computational evidence |
Reference(s) |
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