RegulonDB RegulonDB 11.1: Operon Form
   

rydC operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: rydC
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: rydC
Gene(s): rydC   Genome Browser M3D Gene expression COLOMBOS
Evidence: [COMP-AINF-SINGLE-DIRECTON] Automated inference that a single-gene directon is a transcription unit
[EXP-IDA-BOUNDARIES-DEFINED] Boundaries of transcription experimentally identified
Reference(s): [1] Antal M., et al., 2005
Promoter
Name: rydCp
+1: 1491506
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 0
Sequence: agatggacgtatgggcaaggattatggttttatttatcatacaaataaatataataggcgCttccgatgtagacccgtatt
                                  -35                  -10  +1                   
Evidence: [COMP-AINF]
[COMP-HINF-POSITIONAL-IDENTIFICATION]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
Reference(s): [1] Antal M., et al., 2005
[2] Huerta AM., et al., 2003


Evidence    

 [COMP-AINF] Inferred computationally without human oversight

 [COMP-HINF-POSITIONAL-IDENTIFICATION] Human inference of promoter position

 [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] Transcription initiation mapping


Reference(s)    

 [1] Antal M., Bordeau V., Douchin V., Felden B., 2005, A small bacterial RNA regulates a putative ABC transporter., J Biol Chem 280(9):7901-8

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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