![]() ![]() ![]() ![]() |
Name: | entCEBA-ybdB | ||||||||||
Synonym(s): | OP00227 | ||||||||||
Gene(s): | entC, entE, entB, entA, entH Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Note(s): | The mdtEF-tolC, malEFG, gadBC, treBC, entCEBA-ybdB, hdeAB-yhiD, and alaE operons were differentially regulated after induction of the nonnative organic acid citramalate Webb J,2019 Expression of entC, along with that of other genes also regulated by Fur, is reduced under Zn excess Xu Z,2019. |
||||||||||
Evidence: | [EXP-IMP-POLAR-MUTATION] Polar mutation | ||||||||||
Reference(s): |
[1] Nahlik MS., et al., 1989 [2] Ozenberger BA., et al., 1989 [3] Schultz JE., et al., 1991 |
||||||||||
Promoter | |||||||||||
Name: | entCp | ||||||||||
+1: | 624831 | ||||||||||
Sigma Factor: | Sigma70 Sigmulon | ||||||||||
Distance from start of the gene: | 54 | ||||||||||
Sequence: |
ttgcagattgcgttacctcaagagttgacatagtgcgcgtttgcttttaggttagcgaccGaaaatataaatgataatcat -35 -10 +1 |
||||||||||
Evidence: |
[COMP-AINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] [EXP-IMP] |
||||||||||
Reference(s): |
[4] Brickman TJ., et al., 1990 [5] Huerta AM., et al., 2003 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
remote | CRP-cyclic-AMP | activator | entCp | 624553 | 624574 | -267.5 | gcgtaatgacAAATTCGACAAAGCGCACAATCcgtcccctcg | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] | W | [6] |
proximal | CRP-cyclic-AMP | activator | entCp | 624791 | 624812 | -29.5 | cgttacctcaAGAGTTGACATAGTGCGCGTTTgcttttaggt | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] | W | [6] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
remote | Fur-Fe2+ | repressor | entCp | 624722 | 624740 | -100.0 | cgaatccatcAATAATGCTTCTCATTTTCattgtaacca | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] | W | [6] |
proximal | Fur-Fe2+ | repressor | entCp | 624834 | 624852 | 13.0 | agcgaccgaaAATATAAATGATAATCATTattaaagcct | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [4], [6], [7] |
proximal | Fur-Fe2+ | repressor | entCp | 624837 | 624855 | 16.0 | gaccgaaaatATAAATGATAATCATTATTaaagccttta | nd | [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | nd | [7] |
proximal | Fur-Fe2+ | repressor | entCp | 624840 | 624858 | 19.0 | cgaaaatataAATGATAATCATTATTAAAgcctttatca | nd | [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | nd | [4], [7] |
proximal | Fur-Fe2+ | repressor | entCp | 624846 | 624864 | 25.0 | tataaatgatAATCATTATTAAAGCCTTTatcattttgt | nd | [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | nd | [4] |
remote | Fur-Fe2+ | repressor | entCp | 624852 | 624870 | 31.0 | tgataatcatTATTAAAGCCTTTATCATTttgtggagga | nd | [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | nd | [7] |
remote | Fur-Fe2+ | repressor | entCp | 624879 | 624897 | 58.0 | ttttgtggagGATGATATGGATACGTCACtggctgagga | nd | [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | nd | [4] |
Name: | entH |
Gene(s): | entH Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [IC] Inferred by curator |
Promoter | |
Name: | entHp |
+1: | 629292 |
Distance from start of the gene: | 8 |
Sequence: |
gacctcgccagccatattaccctacaggatattgtggtcgatggcggctcaacgctggggGcataagcatgatctggaaac |
Evidence: | [EXP-IDA-HPT-TRANSCR-INIT-M-RACE-MAP] |
Reference(s): | [8] Mendoza-Vargas A., et al., 2009 |
Reference(s) |
![]() |
---|---|