RegulonDB RegulonDB 11.2: Operon Form
   

ryfD operon and associated TUs in Escherichia coli K-12 genome


Transcription unit       
Name: ryfD
Gene(s): ryfD   Genome Browser M3D Gene expression COLOMBOS
Evidence: [EXP-IDA-TRANSCRIPT-LEN-DETERMINATION] Length of transcript experimentally determined
Reference(s): [1] Kawano M., et al., 2005
Promoter
Name: ryfDp
+1: 2734295
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 0
Sequence: atcgtcgcgacaagaccaccggtcgtatggcaagtttcatttggctgatataacctaaagAatcaagacgatccggtacgc
                                -35                   -10   +1                   
Evidence: [COMP-AINF]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
Reference(s): [2] Huerta AM., et al., 2003
[1] Kawano M., et al., 2005


Evidence    

 [COMP-AINF] Inferred computationally without human oversight

 [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] Transcription initiation mapping


Reference(s)    

 [1] Kawano M., Reynolds AA., Miranda-Rios J., Storz G., 2005, Detection of 5'- and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli., Nucleic Acids Res 33(3):1040-50

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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