![]() ![]() ![]() ![]() |
Name: | ycjXF-tyrR |
Gene(s): | ycjX, ycjF, tyrR Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [ITCR] Inferred through co-regulation |
Reference(s): | [1] Nonaka G., et al., 2006 |
Promoter | |
Name: | ycjXp |
+1: | 1384069 |
Sigma Factor: | Sigma32 Sigmulon |
Distance from start of the gene: | 48 |
Sequence: |
tcgccggtcgatgacaacacgggcagttgataatcaatggcctggcccccacattcatatCcttacgaatgattttttttc -35 -10 +1 |
Evidence: |
[AIBSCS] [AIPP] [ICWHO] [IDA] [IEP] [TIM] |
Reference(s): |
[2] Huerta AM., et al., 2003 [1] Nonaka G., et al., 2006 [3] Wade JT., et al., 2006 |
Name: | tyrR | |||||||||
Synonym(s): | OP00096 | |||||||||
Gene(s): | tyrR Genome Browser M3D Gene expression COLOMBOS | |||||||||
Note(s): | In the regulatory region of the tyrR gene there are two TyrR boxes Cornish EC,1986. Pittard AJ,1991 where the protein appears to bind without a cofactor to autorepress the expression of the gene Camakaris H,1982. | |||||||||
Evidence: | [BTEI] Boundaries of transcription experimentally identified | |||||||||
Reference(s): | [5] Cornish EC., et al., 1986 | |||||||||
Promoter | ||||||||||
Name: | tyrRp | |||||||||
+1: | 1386692 | |||||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||||
Distance from start of the gene: | 28 | |||||||||
Sequence: |
tgtcaatgattgttgacagaaaccttcctgctatccaaatagtgtcatatcatcatattaAttgttcttttttcaggtgaa -35 -10 +1 |
|||||||||
Evidence: |
[HIPP] [ICWHO] [TIM] |
|||||||||
Reference(s): |
[5] Cornish EC., et al., 1986 [2] Huerta AM., et al., 2003 |
|||||||||
Terminator(s) | ||||||||||
Type: | rho-independent | |||||||||
Sequence: | agtaagcgcgAATATGCCTGATGGTGCAACACCATCAGGCATATTaaattatgct | |||||||||
Reference(s): | [5] Cornish EC., et al., 1986 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | TyrR | repressor | tyrRp | 1386588 | 1386605 | -95.5 | tatcgggtgcTGACCGGATATCTTTACGccgaagtgcc | nd | [GEA], [APIORCISFBSCS] | [6], [7] |
proximal | TyrR | repressor | tyrRp | 1386632 | 1386649 | -51.5 | tccgtctttgTGTCAATGATTGTTGACAgaaaccttcc | nd | [GEA], [APIORCISFBSCS] | [5], [6] |
Name: | ycjXF |
Gene(s): | ycjX, ycjF Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [ICWHO] Inferred computationally without human oversight |