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| Operon |  |
|---|---|
| Name: | ycjXF-tyrR |
| This page displays every known transcription unit of this operon and their known regulation. | |
| Name: | ycjXF-tyrR |
| Gene(s): | ycjX, ycjF, tyrR Genome Browser M3D Gene expression COLOMBOS |
| Evidence: | [ITCR] Inferred through co-regulation |
| Reference(s): | [1] Nonaka G., et al., 2006 |
| Promoter | |
| Name: | ycjXp |
| +1: | 1384069 |
| Sigma Factor: | Sigma32 Sigmulon |
| Distance from start of the gene: | 48 |
| Sequence: |
tcgccggtcgatgacaacacgggcagttgataatcaatggcctggcccccacattcatatCcttacgaatgattttttttc -35 -10 +1 |
| Evidence: |
[AIPP] [ICWHO] [IDA] [IEP] [TIM] |
| Reference(s): |
[2] Huerta AM., et al., 2003 [1] Nonaka G., et al., 2006 [3] Wade JT., et al., 2006 |
| Name: | tyrR | |||||||||
| Synonym(s): | OP00096 | |||||||||
| Gene(s): | tyrR Genome Browser M3D Gene expression COLOMBOS | |||||||||
| Note(s): | In the regulatory region of the tyrR gene there are two TyrR boxes Cornish EC,1986. Pittard AJ,1991 where the protein appears to bind without a cofactor to autorepress the expression of the gene Camakaris H,1982. | |||||||||
| Evidence: | [BTEI] Boundaries of transcription experimentally identified | |||||||||
| Reference(s): | [5] Cornish EC., et al., 1986 | |||||||||
| Promoter | ||||||||||
| Name: | tyrRp | |||||||||
| +1: | 1386692 | |||||||||
| Sigma Factor: | Sigma70 Sigmulon | |||||||||
| Distance from start of the gene: | 28 | |||||||||
| Sequence: |
tgtcaatgattgttgacagaaaccttcctgctatccaaatagtgtcatatcatcatattaAttgttcttttttcaggtgaa -35 -10 +1 |
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| Evidence: |
[HIPP] [ICWHO] [TIM] |
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| Reference(s): |
[5] Cornish EC., et al., 1986 [2] Huerta AM., et al., 2003 |
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| Terminator(s) | ||||||||||
| Type: | rho-independent | |||||||||
| Sequence: | agtaagcgcgAATATGCCTGATGGTGCAACACCATCAGGCATATTaaattatgct | |||||||||
| Reference(s): | [5] Cornish EC., et al., 1986 | |||||||||
| Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
|---|---|---|---|---|---|---|---|---|---|---|
| LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
| remote | TyrR | repressor | tyrRp | 1386588 | 1386605 | -95.5 | tatcgggtgcTGACCGGATATCTTTACGCcgaagtgccc | nd | [APIORCISFBSCS], [GEA] | [6], [7] |
| proximal | TyrR | repressor | tyrRp | 1386632 | 1386649 | -51.5 | tccgtctttgTGTCAATGATTGTTGACAGaaaccttcct | nd | [APIORCISFBSCS], [GEA] | [5], [6] |
| Name: | ycjXF |
| Gene(s): | ycjX, ycjF Genome Browser M3D Gene expression COLOMBOS |
| Evidence: | [ICWHO] Inferred computationally without human oversight |
[AIPP] Automated inference of promoter position