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Name: | gapA |
Gene(s): | gapA Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [BTEI] Boundaries of transcription experimentally identified |
Reference(s): | [1] Shimada T., et al., 2005 |
Promoter | |
Name: | gapAp7 |
+1: | 1862240 |
Distance from start of the gene: | 531 |
Sequence: |
agtctttgatataacgaatggattcttcacttaccggttcgtagaaactgggccagccacAgccggaatcatacttggttt |
Evidence: | [TIM] |
Reference(s): | [1] Shimada T., et al., 2005 |
Name: | gapA |
Gene(s): | gapA Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [BTEI] Boundaries of transcription experimentally identified |
Reference(s): | [1] Shimada T., et al., 2005 |
Promoter | |
Name: | gapAp6 |
+1: | 1862247 |
Distance from start of the gene: | 524 |
Sequence: |
gatataacgaatggattcttcacttaccggttcgtagaaactgggccagccacagccggaAtcatacttggtttgggaatg |
Evidence: | [TIM] |
Reference(s): | [1] Shimada T., et al., 2005 |
Name: | gapA | |||||||||
Gene(s): | gapA Genome Browser M3D Gene expression COLOMBOS | |||||||||
Evidence: | [ICWHO] Inferred computationally without human oversight | |||||||||
Promoter | ||||||||||
Name: | gapAp4 | |||||||||
+1: | 1862526 | |||||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||||
Distance from start of the gene: | 245 | |||||||||
Sequence: |
tgactgattctaacaaaacattaacaccaactggcaaaattttgtcctaaacttgatctcGacgaaatggctgcacctaaa -35 -10 +1 |
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Evidence: |
[HIPP] [ICWHO] [TIM] |
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Reference(s): |
[2] Charpentier B., et al., 1994 [3] Huerta AM., et al., 2003 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | Cra | repressor | gapAp4 | 1862001 | 1862018 | -516.5 | tggaataagtTGCTGAATCGTTTTTTCAaccgttgatt | nd | [GEA], [APIORCISFBSCS], [BPP] | [1] |
remote | Cra | repressor | gapAp4 | 1862683 | 1862700 | 166.5 | ttgtcgcaatGATTGACACGATTCCGCTtgacgctgcg | nd | [GEA], [AIBSCS], [BPP] | [1] |
Name: | gapA | |||||||||
Gene(s): | gapA Genome Browser M3D Gene expression COLOMBOS | |||||||||
Evidence: | [ICWHO] Inferred computationally without human oversight | |||||||||
Promoter | ||||||||||
Name: | gapAp3 | |||||||||
+1: | 1862597 | |||||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||||
Distance from start of the gene: | 174 | |||||||||
Sequence: |
tgcacctaaatcgtgatgaaaatcacatttttatcgtaattgccctttaaaattcggggcGccgaccccatgtggtctcaa -35 -10 +1 |
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Evidence: |
[HIPP] [ICWHO] [TIM] |
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Reference(s): |
[2] Charpentier B., et al., 1994 [3] Huerta AM., et al., 2003 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | CRP-cyclic-AMP | activator | gapAp3 | 1862545 | 1862566 | -41.5 | gctgcacctaAATCGTGATGAAAATCACATTTttatcgtaat | nd | [GEA], [APIORCISFBSCS] | [2] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | Cra | repressor | gapAp3 | 1862001 | 1862018 | -587.5 | tggaataagtTGCTGAATCGTTTTTTCAaccgttgatt | nd | [GEA], [APIORCISFBSCS], [BPP] | [1] |
remote | Cra | repressor | gapAp3 | 1862683 | 1862700 | 95.5 | ttgtcgcaatGATTGACACGATTCCGCTtgacgctgcg | nd | [GEA], [AIBSCS], [BPP] | [1] |
Name: | gapA-yeaD | |||||||||
Gene(s): | gapA, yeaD Genome Browser M3D Gene expression COLOMBOS | |||||||||
Evidence: | [ITCR] Inferred through co-regulation | |||||||||
Reference(s): | [4] Nonaka G., et al., 2006 | |||||||||
Promoter | ||||||||||
Name: | gapAp2 | |||||||||
+1: | 1862618 | |||||||||
Sigma Factor: | Sigma32 Sigmulon | |||||||||
Distance from start of the gene: | 153 | |||||||||
Sequence: |
atcacatttttatcgtaattgccctttaaaattcggggcgccgaccccatgtggtctcaaGcccaaaggaagagtgaggcg -35 -10 +1 |
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Evidence: |
[AIBSCS] [AIPP] [HIPP] [ICWHO] [IDA] [TIM] |
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Reference(s): |
[5] Charpentier B., et al., 1998 [2] Charpentier B., et al., 1994 [3] Huerta AM., et al., 2003 [4] Nonaka G., et al., 2006 [6] Olvera L., et al., 2009 [7] Wade JT., et al., 2006 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | Cra | repressor | gapAp2 | 1862001 | 1862018 | -608.5 | tggaataagtTGCTGAATCGTTTTTTCAaccgttgatt | nd | [GEA], [APIORCISFBSCS], [BPP] | [1] |
remote | Cra | repressor | gapAp2 | 1862683 | 1862700 | 74.5 | ttgtcgcaatGATTGACACGATTCCGCTtgacgctgcg | nd | [GEA], [AIBSCS], [BPP] | [1] |
Name: | gapA | |||||||||
Gene(s): | gapA Genome Browser M3D Gene expression COLOMBOS | |||||||||
Evidence: | [ICWHO] Inferred computationally without human oversight | |||||||||
Promoter | ||||||||||
Name: | gapAp | |||||||||
+1: | 1862735 | |||||||||
Sigma Factor: | Sigma38 Sigmulon | |||||||||
Distance from start of the gene: | 36 | |||||||||
Sequence: |
gtcgcaatgattgacacgattccgcttgacgctgcgtaaggtttttgtaattttacaggcAaccttttattcactaacaaa -35 -10 +1 |
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Evidence: |
[HIPP] [HTTIM] [ICWHO] [IHBCE] [IMP] [RS-EPT-CBR] [TIM] |
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Reference(s): |
[5] Charpentier B., et al., 1998 [2] Charpentier B., et al., 1994 [3] Huerta AM., et al., 2003 [6] Olvera L., et al., 2009 [8] Salgado H, et al., 2012 [9] Thouvenot B., et al., 2004 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | Cra | repressor | gapAp | 1862001 | 1862018 | -725.5 | tggaataagtTGCTGAATCGTTTTTTCAaccgttgatt | nd | [GEA], [APIORCISFBSCS], [BPP] | [1] |
proximal | Cra | repressor | gapAp | 1862683 | 1862700 | -43.5 | ttgtcgcaatGATTGACACGATTCCGCTtgacgctgcg | nd | [GEA], [AIBSCS], [BPP] | [1] |
Name: | gapA | |||||||||
Gene(s): | gapA Genome Browser M3D Gene expression COLOMBOS | |||||||||
Evidence: | [ICWHO] Inferred computationally without human oversight | |||||||||
Promoter | ||||||||||
Name: | gapAp1 | |||||||||
+1: | 1862735 | |||||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||||
Distance from start of the gene: | 36 | |||||||||
Sequence: |
gtcgcaatgattgacacgattccgcttgacgctgcgtaaggtttttgtaattttacaggcAaccttttattcactaacaaa -35 -10 +1 |
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Evidence: |
[HIPP] [HTTIM] [ICWHO] [IHBCE] [IMP] [RS-EPT-CBR] [TIM] |
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Reference(s): |
[5] Charpentier B., et al., 1998 [2] Charpentier B., et al., 1994 [3] Huerta AM., et al., 2003 [6] Olvera L., et al., 2009 [8] Salgado H, et al., 2012 [9] Thouvenot B., et al., 2004 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | Cra | repressor | gapAp1 | 1862001 | 1862018 | -725.5 | tggaataagtTGCTGAATCGTTTTTTCAaccgttgatt | nd | [GEA], [APIORCISFBSCS], [BPP] | [1] |
proximal | Cra | repressor | gapAp1 | 1862683 | 1862700 | -43.5 | ttgtcgcaatGATTGACACGATTCCGCTtgacgctgcg | nd | [GEA], [AIBSCS], [BPP] | [1] |
Name: | yeaD |
Gene(s): | yeaD Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [ICWHO] Inferred computationally without human oversight |
RNA cis-regulatory element | ![]() |
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Regulation, transcriptional elongation | |
Attenuator type: | Transcriptional |
Strand: | forward |
Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
---|---|---|---|---|---|
terminator | -17.5 | 1863790 | 1863819 | gtgatctaaaAAGAGCGACTTCGGTCGCTCTTTTTTTTAcctgataaaa | |
anti-terminator | -4.7 | 1863765 | 1863801 | tctccaaataAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTcggtcgctct | |
anti-anti-terminator | -6.2 | 1863725 | 1863773 | accggttactCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGAtgacactgtg |
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
Reference(s) |
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