RegulonDB RegulonDB 10.9: Operon Form
   

ybeD-lipB operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: ybeD-lipB
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: ybeD-lipB
Gene(s): lipB, ybeD   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ITCR] Inferred through co-regulation
Reference(s): [1] Nonaka G., et al., 2006
Promoter
Name: ybeDp2
+1: 662706
Sigma Factor: Sigma32 Sigmulon
Distance from start of the gene: 64
Sequence: cactggtttggttaaaaattaaacacttgaaagtgtaatttccgtccccatatactaagcAtcagtaaaaaactcccgcct
                           -35                -10           +1                   
Evidence: [HIPP]
[ICWHO]
[IDA]
[IEP]
[RS-EPT-CBR]
Reference(s): [2] Huerta AM., et al., 2003
[1] Nonaka G., et al., 2006
[3] Salgado H, et al., 2012
[4] Wade JT., et al., 2006


Transcription unit       
Name: ybeD-lipB
Gene(s): lipB, ybeD   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ITCR] Inferred through co-regulation
Reference(s): [1] Nonaka G., et al., 2006
Promoter
Name: ybeDp
+1: 662706
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 64
Sequence: cactggtttggttaaaaattaaacacttgaaagtgtaatttccgtccccatatactaagcAtcagtaaaaaactcccgcct
                           -35                     -10      +1                   
Evidence: [HIPP]
[ICWHO]
[IDA]
[IEP]
[RS-EPT-CBR]
Reference(s): [2] Huerta AM., et al., 2003
[1] Nonaka G., et al., 2006
[3] Salgado H, et al., 2012
[4] Wade JT., et al., 2006


Transcription unit       
Name: ybeD
Gene(s): ybeD   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight


Transcription unit       
Name: lipB
Gene(s): lipB   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight


RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Translational
Strand: reverse
Evidence: [ICA] Inferred by computational analysis
Reference(s): [5] Merino E, et al., 2005
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -10.9 662648 662686 aactcccgccTTCTGGCGGGAGTTGCTATTTAATTACGTTACGCCGGAgctgacatga
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"





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