RegulonDB RegulonDB 10.10: Operon Form
   

ydhYVWXUT operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: ydhYVWXUT
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: ydhYVWXUT
Gene(s): ydhT, ydhU, ydhX, ydhW, ydhV, ydhY   Genome Browser M3D Gene expression COLOMBOS
Evidence: [LTED] Length of transcript experimentally determined
[PAGTSBP] Products of adjacent genes in the same biological process
Reference(s): [1] Partridge JD., et al., 2008
Promoter
Name: ydhYp
+1: 1754642
Sigma Factor: Sigma38 Sigmulon
Distance from start of the gene: 165
Sequence: tgtaattttaattgataacgatcaatgttaagggctcagaataatcacattattttttctCctaaccataaaggattagtt
                            -35               -10           +1                   
Evidence: [ICWHO]
[IEP]
[IHBCE]
[TIM]
Reference(s): [2] Huerta AM., et al., 2003
[3] Maciag A., et al., 2011
[1] Partridge JD., et al., 2008
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal FNR activator ydhYp 1754678 1754691 -42.5 gtaattttaaTTGATAACGATCAAtgttaagggc nd [GEA], [APIORCISFBSCS], [BPP], [SM] [1], [4]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal NarL-phosphorylated repressor ydhYp 1754625 1754632 15.0 cctaaccataAAGGATTAgtttatcggc nd [GEA], [APIORCISFBSCS], [BPP], [SM] [1]
proximal NarL-phosphorylated repressor ydhYp 1754634 1754641 6.0 attttttctcCTAACCATaaaggattag nd [GEA], [APIORCISFBSCS], [BPP], [SM] [1]
proximal NarL-phosphorylated repressor ydhYp 1754655 1754661 -16.0 gggctcagaaTAATCACattatttttt nd [GEA], [APIORCISFBSCS], [BPP], [SM] [1]
proximal NarL-phosphorylated repressor ydhYp 1754681 1754687 -42.0 ttttaattgaTAACGATcaatgttaag nd [GEA], [APIORCISFBSCS] [1]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal NarP-phosphorylated repressor ydhYp 1754625 1754632 15.0 cctaaccataAAGGATTAgtttatcggc nd [GEA], [APIORCISFBSCS], [BPP], [SM] [1]
proximal NarP-phosphorylated repressor ydhYp 1754634 1754641 6.0 attttttctcCTAACCATaaaggattag nd [GEA], [APIORCISFBSCS], [BPP], [SM] [1]


Transcription unit       
Name: ydhXUT
Gene(s): ydhT, ydhU, ydhX   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight


Transcription unit       
Name: ydhYVW
Gene(s): ydhW, ydhV, ydhY   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight





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