RegulonDB RegulonDB 10.9: Operon Form
   

iraM operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: iraM
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: iraM
Gene(s): iraM   Genome Browser M3D Gene expression COLOMBOS
Evidence: [BTEI] Boundaries of transcription experimentally identified
[ICWHO] Inferred computationally without human oversight
Reference(s): [1] Mendoza-Vargas A., et al., 2009
Promoter
Name: iraMp
+1: 1212090
Distance from start of the gene: 87
Sequence: agattccttgctttaaattttattttatataagccatcattttaattaatttatttttttGaggggggggtaatatactca
Evidence: [HTTIM]    
Reference(s): [1] Mendoza-Vargas A., et al., 2009
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal ArcA-Phosphorylated activator iraMp 1212099 1212113 -16.5 atataagccaTCATTTTAATTAATTTatttttttga nd [AIBSCS] [3]
remote ArcA-Phosphorylated activator iraMp 1212253 1212267 -170.5 cataaaggctATGTTTTAATTACAGGatgttcagtc nd [AIBSCS] [3]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal FNR activator iraMp 1212154 1212167 -70.5 aaaatctcatTTTGTTTAACATCCAttgagattcc nd [AIBSCS] [3]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal PhoP-Phosphorylated activator iraMp 1212150 1212166 -68.0 aaatctcattTTGTTTAACATCCATTGAgattccttgc nd [APIORCISFBSCS], [BPP], [GEA] [2], [4]
remote PhoP-Phosphorylated activator iraMp 1212282 1212298 -199.5 cataatgtttAGCAAATTGGCACAAAGtagcataaag nd [APIORCISFBSCS], [GEA] [2]


Transcription unit          
Name: iraM
Gene(s): iraM   Genome Browser M3D Gene expression COLOMBOS
Evidence: [AISGDTU] Automated inference that a single-gene directon is a transcription unit
[BTEI] Boundaries of transcription experimentally identified
Reference(s): [4] Eguchi Y., et al., 2011
Promoter
Name: iraMp2
+1: 1212123
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 120
Sequence: ttcacaaaatctcattttgtttaacatccattgagattccttgctttaaattttattttaTataagccatcattttaatta
                               -35                    -10   +1                   
Evidence: [ICWHO]
[TIM]
Reference(s): [4] Eguchi Y., et al., 2011
[5] Huerta AM., et al., 2003
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal PhoP-Phosphorylated activator iraMp2 1212150 1212166 -35.0 aaatctcattTTGTTTAACATCCATTGAgattccttgc nd [APIORCISFBSCS], [BPP], [GEA], [APIORCISFBSCS], [BPP], [GEA] [2], [4]





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