![]() ![]() ![]() ![]() |
Name: | iraM | |||||||||
Gene(s): | iraM Genome Browser M3D Gene expression COLOMBOS | |||||||||
Evidence: | [BTEI] Boundaries of transcription experimentally identified [ICWHO] Inferred computationally without human oversight |
|||||||||
Reference(s): | [1] Mendoza-Vargas A., et al., 2009 | |||||||||
Promoter | ||||||||||
Name: | iraMp1 | |||||||||
+1: | 1212090 | |||||||||
Distance from start of the gene: | 87 | |||||||||
Sequence: |
agattccttgctttaaattttattttatataagccatcattttaattaatttatttttttGaggggggggtaatatactca |
|||||||||
Evidence: |
[HTTIM] ![]() ![]() |
|||||||||
Reference(s): | [1] Mendoza-Vargas A., et al., 2009 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | ArcA-phosphorylated | activator | iraMp1 | 1212099 | 1212113 | -16.5 | tataagccatCATTTTAATTAATTTatttttttga | nd | [AIBSCS] | [3] |
remote | ArcA-phosphorylated | activator | iraMp1 | 1212253 | 1212267 | -170.5 | ataaaggctaTGTTTTAATTACAGGatgttcagtc | nd | [AIBSCS] | [3] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | PhoP-phosphorylated | activator | iraMp1 | 1212150 | 1212166 | -68.0 | aatctcatttTGTTTAACATCCATTGAgattccttgc | nd | [GEA], [APIORCISFBSCS], [BPP] | [2], [4] |
remote | PhoP-phosphorylated | activator | iraMp1 | 1212282 | 1212298 | -199.5 | cataatgtttAGCAAATTGGCACAAAGtagcataaag | nd | [GEA], [APIORCISFBSCS] | [2] |
Name: | iraM | |||||||||
Gene(s): | iraM Genome Browser M3D Gene expression COLOMBOS | |||||||||
Evidence: | [AISGDTU] Automated inference that a single-gene directon is a transcription unit [BTEI] Boundaries of transcription experimentally identified |
|||||||||
Reference(s): | [4] Eguchi Y., et al., 2011 | |||||||||
Promoter | ||||||||||
Name: | iraMp2 | |||||||||
+1: | 1212123 | |||||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||||
Distance from start of the gene: | 120 | |||||||||
Sequence: |
ttcacaaaatctcattttgtttaacatccattgagattccttgctttaaattttattttaTataagccatcattttaatta -35 -10 +1 |
|||||||||
Evidence: |
[ICWHO] [IHBCE] [TIM] |
|||||||||
Reference(s): |
[4] Eguchi Y., et al., 2011 [5] Huerta AM., et al., 2003 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | PhoP-phosphorylated | activator | iraMp2 | 1212150 | 1212166 | -35.0 | aatctcatttTGTTTAACATCCATTGAgattccttgc | nd | [APIORCISFBSCS], [BPP], [GEA], [APIORCISFBSCS], [BPP] | [2], [4] |
Reference(s) |
![]() |
---|---|