Name: |
lsrRK |
Gene(s): |
lsrK, lsrR
Genome Browser
M3D Gene expression
COLOMBOS
|
Evidence: |
[LTED] Length of transcript experimentally determined |
Reference(s): |
[1] Wang L., et al., 2005
|
Promoter |
|
Name: |
lsrRp |
+1: |
1601257 |
Sigma Factor: |
Sigma70 Sigmulon |
Distance from start of the gene: |
16
|
Sequence: |
ccatcacagatataaatgagcaagaactgaacaattgcattaaagatttaaatatgttcaAagtgaagaatgaattatgac -35 -10 +1
|
Note(s): |
Wang et al. demonstrated in 2005 that lrsK could be transcribed together with lrsR Wang L,2005. |
Evidence: |
[AIPP] [ICWHO] [IEP]
|
Reference(s): |
[2] Huerta AM., et al., 2003 [1] Wang L., et al., 2005
|
Type |
Transcription factor |
Function |
Promoter |
Binding Sites |
Growth Conditions |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
proximal |
CRP-cyclic-AMP
|
activator |
lsrRp |
1601307
|
1601328
|
-60.5
|
cgtagagtcaAACTGTGGTTGCCATCACAGATataaatgagc |
nd
|
[BPP], [GEA], [SM], [APIORCISFBSCS], [SM]
|
[1], [3]
|
remote |
CRP-cyclic-AMP
|
activator |
lsrRp |
1601378
|
1601399
|
-131.5
|
ttgcacatatTTCCGACGAATAGATCACAATTtatgctattt |
nd
|
[BPP], [GEA], [SM], [BPP], [SM]
|
[3]
|
Type |
Transcription factor |
Function |
Promoter |
Binding Sites |
Growth Conditions |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
proximal |
LsrR
|
repressor |
lsrRp |
1601261
|
1601290
|
-18.5
|
gagcaagaacTGAACAATTGCATTAAAGATTTAAATATGTtcaaagtgaa |
nd
|
[GEA], [BPP], [SM]
|
[1], [4], [5]
|
Transcription factor |
Function |
Promoter |
Binding Sites |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
CRP-cyclic-AMP |
activator |
lsrRp |
1601378
|
1601399
|
-131.5
|
ttgcacatatTTCCGACGAATAGATCACAATTtatgctattt
|
[BPP], [GEA], [SM]
|
[3]
|
CRP-cyclic-AMP |
activator |
lsrRp |
1601307
|
1601328
|
-60.5
|
cgtagagtcaAACTGTGGTTGCCATCACAGATataaatgagc
|
[BPP], [GEA], [SM]
|
[1], [3]
|
LsrR |
repressor |
lsrRp |
1601261
|
1601290
|
-18.5
|
gagcaagaacTGAACAATTGCATTAAAGATTTAAATATGTtcaaagtgaa
|
[GEA]
|
[1], [4], [5]
|