Name: |
tomB-hha |
Gene(s): |
hha, tomB
Genome Browser
M3D Gene expression
COLOMBOS
|
Evidence: |
[COMP-AINF] Inferred computationally without human oversight |
Promoter |
|
Name: |
tomBp |
+1: |
480794 |
Sigma Factor: |
Sigma70 Sigmulon |
Distance from start of the gene: |
86
|
Sequence: |
attgtaatttttcgtaataatgcgatgaaaacctgcaaagagtggcttatagttaagctaAcaaacgagagggcaagtcca -35 -10 +1
|
Note(s): |
The tomBp1 promoter is significantly affected by ectopic production of a nanoRNase during stationary-phase growth Vvedenskaya IO,2012 |
Evidence: |
[COMP-AINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
|
Reference(s): |
[1] Huerta AM., et al., 2003 [2] Yamamoto K., et al., 2006
|
Transcription factor |
Function |
Promoter |
Binding Sites |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
BasR-phosphorylated |
activator |
tomBp |
481179
|
481198
|
-394.5
|
ataacctacgAACATTAAGGAGTAATTGAAccaccaactc
|
nd
|
[3]
|
PdhR |
repressor |
tomBp |
480964
|
480980
|
-178.0
|
gcaatcctggTATTAGTGTCACCAATTtcatctggcg
|
nd
|
[4]
|
CpxR-phosphorylated |
activator |
tomBp |
480843
|
480844
|
-50.0
|
attgtaatttTtcgtaataat
|
nd
|
[2]
|