RegulonDB RegulonDB 11.1: Operon Form
   

sibB operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: sibB
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: sibB
Gene(s): sibB   Genome Browser M3D Gene expression COLOMBOS
Note(s): Based on Northern and 5'-3' RACE analysis, the sibB gene produces two distinct transcripts. The 3' end shorter transcript could be a result of processing Fozo EM,2008
Evidence: [COMP-AINF] Inferred computationally without human oversight
[EXP-IDA-BOUNDARIES-DEFINED] Boundaries of transcription experimentally identified
[EXP-IDA-TRANSCRIPT-LEN-DETERMINATION] Length of transcript experimentally determined
Reference(s): [1] Fozo EM., et al., 2008
Promoter
Name: sibBp
+1: 2153646
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 0
Sequence: atcgcagactacaaagcctgcggattgacaatcttatcgtgaaggcatactttcaggagtGagggtagagcggggtttccc
                         -35                    -10         +1                   
Evidence: [COMP-AINF]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
Reference(s): [1] Fozo EM., et al., 2008
[2] Huerta AM., et al., 2003


Evidence    

 [COMP-AINF] Inferred computationally without human oversight

 [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] Transcription initiation mapping


Reference(s)    

 [1] Fozo EM., Kawano M., Fontaine F., Kaya Y., Mendieta KS., Jones KL., Ocampo A., Rudd KE., Storz G., 2008, Repression of small toxic protein synthesis by the Sib and OhsC small RNAs., Mol Microbiol 70(5):1076-93

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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