RegulonDB RegulonDB 10.8: Operon Form
   

rlmD operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: rlmD
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: rlmD
Gene(s): rlmD   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: rlmDp
+1: 2915043
Distance from start of the gene: 43
Sequence: gccaggatcagaatcatcatgcgtgcgcgcaggctgtagttggtcatggagttccgttatGggacaattaaggtcacactg
Evidence: [HTIM]
Reference(s): [1] Mendoza-Vargas A., et al., 2009


Regulation by sRNA    
  Small RNA name (Regulator) Regulation type Mechanism Function Binding Sites Evidence Reference
LeftPos RightPos Sequence (RNA-strand)
  oxyS antisense post-transcriptional regulation repressor      
Notes: "The provided sequence is that of the RNA strand,i.e. 'U's are showed instead the 'T'"


Evidence    

 [HTIM] High-throughput transcription initiation mapping


Reference(s)    

 [1] Mendoza-Vargas A., Olvera L., Olvera M., Grande R., Vega-Alvarado L., Taboada B., Jimenez-Jacinto V., Salgado H., Juarez K., Contreras-Moreira B., Huerta AM., Collado-Vides J., Morett E., 2009, Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coli., PLoS One 4(10):e7526

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