RegulonDB RegulonDB 11.1: Operon Form

ykgR operon and associated TUs in Escherichia coli K-12 genome

Name: ykgR
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: ykgR
Gene(s): ykgR   Genome Browser M3D Gene expression COLOMBOS
Note(s): ykgR gene expression is induced upon heat shock Hemm MR,2010
Evidence: [EXP-IDA-TRANSCRIPT-LEN-DETERMINATION] Length of transcript experimentally determined
Reference(s): [1] Hemm MR., et al., 2010
Name: ykgRp
+1: 313285
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 43
Sequence: ctattcaaatttgtgatacatgtcaaaaaattggttgaccaaactcgttatttatataagGgcacttacgaagtgcactct
                                    -35                   -1+1                   
Evidence: [COMP-AINF]
Reference(s): [1] Hemm MR., et al., 2010
[2] Huerta AM., et al., 2003
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal CRP-cyclic-AMP activator ykgRp 313316 313338 -41.5 catctattcaAATTTGTGATACATGTCAAAAAAttggttgacc nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] W [1]